Did you know that a quick burst of protein could be just a few minutes away? Enter my High-Protein Bagel Bites—perfect for anyone who craves a satisfying snack without the fuss of traditional recipes. With just 15 minutes of prep and cooking, these gluten-free delights offer a crispy exterior and a creamy center, making them an ideal choice for busy mornings or afternoon cravings. They combine nutrition and taste in one portable treat, perfect for those looking to eat healthier without sacrificing on flavor. Not only are they a guilt-free indulgence rich in protein, but they’re also air-fryer friendly—ensuring convenience for even the most hectic lifestyles. What’s your favorite way to enjoy a quick snack? Let’s dive into this recipe together!

Why are High-Protein Bagel Bites a Game-Changer?
Easy-to-Make: These High-Protein Bagel Bites come together in just 15 minutes, perfect for busy individuals looking for a quick snack.
Nutritious & Delicious: Each bite is packed with protein and flavor, thanks to rich ingredients like Greek yogurt and cream cheese.
Gluten-Free Option: Ideal for those avoiding gluten, using a simple blend of gluten-free flour ensures everyone can join in on the fun!
Air-Fryer Friendly: Enjoy the crispy exterior without the hassle of deep-frying—easy cleanup and healthier cooking make this recipe a winner.
Crowd-Pleasing Treat: Serve them at gatherings and watch them disappear! They cater to a variety of preferences with customizable flavors.
Elevate your snack game and enjoy this guilt-free option, or check out more of our high-protein recipes for further inspiration!
High-Protein Bagel Bites Ingredients
For the Dough
• Gluten-Free Flour – Provides structure and a chewy texture; look for an all-purpose blend with xanthan gum for best results.
• Baking Powder – Acts as a leavening agent to give the bagel bites a light rise; ensure it’s fresh for optimal fluffiness.
• Unflavored Protein Powder – Boosts the protein content; whey-casein blends yield an ideal texture for the dough.
• Plain Unsweetened Greek Yogurt – A source of moisture and protein, ensuring a tender crumb; thick varieties work best here.
For the Filling
• Cream Cheese – Delivers a creamy center; block-style cream cheese is easiest to handle for filling.
For the Topping
• Everything But The Bagel Seasoning – Enhances flavor and adds delightful crunch; sprinkle generously for that authentic bagel essence.
• Egg (optional for wash) – Gives a shiny finish and helps toppings stick better, elevating the overall appearance.
With these High-Protein Bagel Bites ingredients, you’re on your way to creating a mouthwatering, nutritious snack in no time!
Step‑by‑Step Instructions for High-Protein Bagel Bites
Step 1: Preheat Your Air Fryer
Start by preheating your air fryer to 350°F (175°C). This step ensures that your High-Protein Bagel Bites cook evenly and develop that perfect golden exterior. While the air fryer heats up, gather your ingredients and equipment, including a mixing bowl, measuring cups, and a baking sheet for easy preparation.
Step 2: Mix Dry Ingredients
In a mixing bowl, combine the gluten-free flour, unflavored protein powder, baking powder, and a pinch of salt. Stir well until the dry ingredients are thoroughly incorporated, forming a uniform mixture. This careful blending ensures that the bagel bites will rise properly and attain that delicious chewy texture to complement their high-protein content.
Step 3: Incorporate Greek Yogurt
Next, add the plain unsweetened Greek yogurt to the dry mixture. Use your hands or a spatula to mix until a sticky dough forms. This process is key for achieving the perfect texture; the dough should feel moist but easy to handle. If it’s too wet, consider adding a sprinkle of more gluten-free flour to balance it out.
Step 4: Divide the Dough
Once your dough is ready, divide it into ten equal pieces, each weighing about 30g. Use your hands to shape each piece into small balls. This step allows for even cooking and ensures each High-Protein Bagel Bite has a similar size, resulting in a consistent and satisfying snack experience.
Step 5: Create the Filling
Flatten each dough piece slightly and place about 1 teaspoon of cream cheese in the center. Fold the dough around the cream cheese and reshape it into a ball, ensuring the filling is securely sealed inside. This creamy center will add a delightful surprise to your High-Protein Bagel Bites when you take a bite!
Step 6: Prepare for Cooking
Lightly brush each ball with beaten egg or spray them with some oil for a shiny finish. Then, generously sprinkle the Everything But The Bagel seasoning on top. This delicious blend enhances the flavor of the bagel bites and adds a delightful crunch, making them even more appetizing.
Step 7: Air Fry the Bagel Bites
Arrange the prepared bagel bites in the air fryer basket, spacing them apart to allow for even cooking. Air fry them at 350°F (175°C) for about 5-6 minutes, until they are golden brown and slightly puffed. Keep an eye on them; they may seem a bit undercooked initially, but they will firm up upon cooling.
Step 8: Cool and Serve
After air frying, let the High-Protein Bagel Bites cool for a couple of minutes before serving. The filling will be hot, and this cooling step ensures you can enjoy them safely. Once cooled slightly, dig in and savor the delightful texture and flavors of these quick and nutritious snacks!

Expert Tips for High-Protein Bagel Bites
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Use Fresh Baking Powder: Ensure your baking powder is fresh to achieve that perfect rise; stale powder can leave your bagel bites flat.
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Mind the Dough Consistency: If your dough feels too sticky, add a little more gluten-free flour gradually. A workable dough leads to better-shaped bites.
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Seal the Cream Cheese Properly: Make sure the dough is well-sealed around the cream cheese; this prevents it from oozing out during cooking.
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Air Fry in Batches: If you’re making a larger batch, air fry the bagel bites in batches to avoid overcrowding. This ensures each one cooks evenly, creating those wonderful crispy edges.
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Customize the Flavor: Don’t hesitate to experiment with the filling or toppings; adding herbs or spices can enhance the flavor profile of your High-Protein Bagel Bites!
Make Ahead Options
These High-Protein Bagel Bites are a fantastic meal prep solution for busy weeknights! You can prepare the dough and shape the bites up to 24 hours in advance—just refrigerate them in an airtight container to maintain freshness. Additionally, the filled bagel bites can be frozen for up to 3 months; simply arrange them on a baking sheet to freeze individually before transferring them to a freezer bag. When you’re ready to serve, air fry them straight from the fridge at 350°F for about 5-6 minutes, or from frozen for an additional minute or two. This way, you’ll enjoy the same delicious taste and texture with minimal effort!
High-Protein Bagel Bites Variations
Feel free to get creative and customize your High-Protein Bagel Bites to suit your preferences and dietary needs!
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Dairy-Free: Swap Greek yogurt for thick coconut yogurt to make these bites creamy without dairy.
Try adding alternative cream cheese flavors like almond or cashew for even more options. -
Flavor Boost: Experiment with flavored cream cheeses, such as garlic and herb or sundried tomato, to enhance the taste profile.
A new filling can make these bagel bites an exciting surprise each time. -
Savory Twist: Incorporate fresh herbs, like chives or dill, into the dough for an aromatic flair.
This subtle flavor enhancement will elevate your bagel bites to gourmet status! -
Sweet Variation: Add cinnamon and raisins for a delightful sweet twist that transforms your bagel bites into a dessert.
Drizzled with a bit of honey or maple syrup, they’re perfect for a special treat! -
Add Some Heat: Blend in red pepper flakes or jalapeños for a spicy kick that complements the creamy filling.
It’s a great way to keep things exciting if you crave a zesty flavor! -
Texture Variety: Mix in seeds like chia or flaxseed into the dough to add a delightful crunch and increase nutritional benefits.
These seeds not only enhance texture but also boost the fiber content in each bite. -
Lighter Option: Instead of cream cheese, use a dollop of hummus as a filling for a lighter, plant-based alternative.
This swap still offers a creamy center while being lower in calories and richer in nutrients. -
Gluten-Free Flour Swap: For a different texture, try almond flour or oat flour in place of gluten-free flour.
Each will provide a unique taste and nutritional profile—just adjust for moisture as needed.
Embark on a culinary adventure and try out these variations! And if you’re looking for more inspiration, check out our delightful range of high-protein recipes to keep your kitchen vibrant and exciting.
What to Serve with High-Protein Bagel Bites
A satisfying, protein-rich snack deserves a fabulous spread to create a complete meal experience!
- Fresh Fruit Salad: Bursting with refreshing flavors, a fruit salad complements the savory bites beautifully, providing a delightful contrast. Enjoy the vibrant colors and natural sweetness.
- Greek Yogurt Parfait: Layer creamy Greek yogurt with granola and berries for a nutritious twist. This adds a touch of creaminess and crunchy texture alongside the bagel bites.
- Veggie Sticks with Hummus: Crunchy vegetables like carrots and cucumbers dipped in hummus round out the meal with fresh, healthy options. It’s a colorful dish full of vitamins!
- Avocado Toast: Spread creamy avocado on whole-grain bread; both hearty and satisfying, it pairs wonderfully with the bagel bites’ fluffy interior. Top it with a sprinkle of sea salt or chili flakes for added zest!
- Smoothie: Blend a refreshing smoothie with spinach, banana, and almond milk. This drink enhances the meal with nutrients and keeps it light and delicious.
- Sparkling Water with Citrus: Elevate your beverage game with sparkling water infused with lemon or lime. This fizzy drink adds a refreshing flair that complements the flavors perfectly.
- Chocolate-Dipped Strawberries: For a sweet touch, dessert options like chocolate-dipped strawberries work wonderfully. They offer a lovely finish after savoring the savory delights!
Storage Tips for High-Protein Bagel Bites
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Room Temperature: Keep leftover High-Protein Bagel Bites in an airtight container at room temperature for up to 2 days to maintain their delicious texture.
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Fridge: For longer storage, refrigerate your bagel bites in an airtight container for up to 4 days. Place paper towels in the container to absorb excess moisture and keep them fresh.
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Freezer: Freeze the bagel bites for up to 3 months. To do so, place them in a single layer on a baking sheet until solid, and then transfer to a freezer-safe bag or container.
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Reheating: To enjoy your frozen High-Protein Bagel Bites, reheat them in the air fryer at 325°F for 4–5 minutes until warm and crispy again.

High-Protein Bagel Bites Recipe FAQs
What type of gluten-free flour should I use?
I recommend using an all-purpose gluten-free flour blend that contains xanthan gum. This will ensure that your bagel bites have a good structure and a chewy texture. Always check the ingredient label to confirm it’s designed for baking, as that can make all the difference in the final product.
How should I store the High-Protein Bagel Bites?
To maintain their deliciousness, store your bagel bites in an airtight container at room temperature for up to 2 days. For a longer shelf life, keep them refrigerated for up to 4 days. Placing paper towels inside the container will help absorb excess moisture and keep them fresh.
Can I freeze these bagel bites?
Absolutely! You can freeze the High-Protein Bagel Bites for up to 3 months. To do this, lay them out in a single layer on a baking sheet in the freezer until they’re solid, then transfer them to a freezer-safe bag. When you’re ready to enjoy, just reheat them in the air fryer at 325°F for 4-5 minutes until they’re heated through and crispy.
Why do my bagel bites feel undercooked after air frying?
It’s very common for these bites to appear undercooked right after frying. They will firm up upon cooling, so give them a few minutes to rest after removing them from the air fryer. If they’re still too soft for your liking, consider adjusting the cooking time slightly—just a minute or two can make a difference.
Are there any dietary considerations for pets or allergies?
Yes, there are a few things to keep in mind. These High-Protein Bagel Bites contain dairy from the Greek yogurt and cream cheese, which may not be suitable for individuals with lactose intolerance or dairy allergies. Additionally, while most ingredients are pet-friendly, avoid sharing the bagel bites with pets due to the cream cheese content, especially if they have any dietary restrictions. Always check for food allergies with any new recipe!

High-Protein Bagel Bites for a Quick and Tasty Snack
Ingredients
Equipment
Method
- Preheat your air fryer to 350°F (175°C).
- Mix dry ingredients: Combine the gluten-free flour, unflavored protein powder, baking powder, and salt in a bowl.
- Incorporate Greek yogurt: Add the Greek yogurt to the dry mixture and mix until a sticky dough forms.
- Divide the dough into ten equal pieces and shape into balls.
- Create the filling: Flatten each ball, add cream cheese, fold, and reshape.
- Prepare for cooking: Brush with egg or oil and sprinkle seasoning on top.
- Air fry the bagel bites for 5-6 minutes until golden brown.
- Cool for a few minutes before serving.
